Below are some definitions of "accidental":
- "happening by chance, unintentionally, or unexpectedly" -- first result from a Google search for "accidental definition"
- "occurring unexpectedly or by chance" -- Merriam Webster
- "happening or existing by chance" -- Cambridge Dictionary
- "happening by chance or accident; not planned; unexpected" -- Dictionary.com
How
likely is it that biological innovations such as tiny microbes or large mammals
could have first appeared on our planet by accidental biological processes, meaning processes that did not involve any intention or purpose? Perhaps the best way
to intelligently consider this question is to make a list of all the
numbers relevant to such a consideration. Then you can make a probability judgment based on these numbers.
I
will now present a list of the numbers that are most relevant when judging the
likelihood of natural biological origins. Every one of these numbers should be carefully studied and pondered by anyone claiming that earthly biological organisms originated by accidental processes, for each of these numbers directly affects the likelihood of such a thing.
Relevant
number 1: the median number of amino acids in a protein molecule
Proteins
are the building blocks of cells, which are the building blocks of
multi-cellular biological organisms. The building blocks of proteins
are amino acids. The number of amino acids in a protein is a key
measure of the complexity of life, and also a key measure of the
difficulty or probability of any type of life accidentally originating. For
example, were it true that a functional protein typically required
only a few amino acids, then it would be relatively easy for a
protein to naturally form from random combinations of amino acids.
The higher the average number of amino acids in a protein, the more
unlikely that a protein could arise by accidental processes.
Proteins
have been very well studied, so we know the average number of amino
acids in proteins. According to this page, the average number of
amino acids in a human protein is 480. The number of amino acids in a human protein varies from about 50 to more than 800. The scientific paper here refers to "some 50,000 enzymes (of average length of 380 amino acids)." On the page here, we read that the median number of amino acids in a human protein is 375, according to a scientific paper.
You
cannot make any relevant probability calculation from such a number
until you also consider the next item on our list.
Relevant
number 2: the total number of possible amino acids that can exist in
any one position in a protein (or in any one spot in the sequence of
amino acids corresponding to the protein)
In
considering proteins, we are interested in the size of the
combinatorial space relevant to the protein. Before it folds into a
three dimensional shape, a protein molecule consists of a chain of amino acids
that may be compared to a string of beads (with each amino acid being
like a bead on this chain). How many possible amino acids might
exist at one spot on this chain? The answer is: using the genetic code
used by all life, there are twenty possible amino acids.
We
can use this number and the previous number to make a rough
calculation of the chance of a random string of amino acids being
exactly like the sequence of amino acids corresponding to a protein.
If we use the previously cited figure of a median of 375 amino acids in a human protein, this
gives us a probability of 1 in 20 to the three hundredth seventy-fifth power, or 1 in
20375. That is a probability of only 1 in 10487.
We
get such a number when we calculate the chance of some
protein having exactly the sequence of amino acids that it has, by
chance. But it might be that a particular protein might have many
minor variations, and still be functional. A reasonable way of
allowing for such possible variations might be to assume that a
protein molecule requires that at least half of its amino acids be
exactly as they are. But even if we make such an assumption, we are
still left with probabilities that are incredibly small. For
example, suppose we assume that only half of the amino acids in an
average protein must be exactly as they are, and then try to calculate the
chance of the protein molecule forming by chance combinations of
amino acids. We are still left with a probability of only 1 in 20
to the one-hundred-eighty-seventh power, which is a probability
of only about 1 in ten to the one-hundred-thirtieth power, or 1 in
10243.
Relevant
number 3: the minimum number of types of proteins in the simplest
living thing
We
have just done some calculations that seem to show that it is
incredibly unlikely that a chance combination of amino acids could
produce a functional protein. So it seems like a miracle of luck is
required for a functional protein to originate. A very relevant
question: how many such “miracles” would be required for the
simplest living thing to exist? In other words, what is the minimum
number of different types of proteins needed for a self-reproducing
organism?
Scientists
have studied this question by tinkering with the genes of extremely
simple microorganisms, trying to take out as many genes as they could
without crippling the microorganism so bad that it cannot reproduce. A team of 9 scientists wrote a scientific paper entitled, “Essential genes of a minimal bacterium.” It analyzed a type of bacteria (Mycoplasma genitalium) that has “the smallest genome of any organism that can be grown in pure culture.” According to wikipedia's article, this bacteria has 525 genes consisting of 580,070 base pairs. The paper concluded that 382 of this bacteria's protein-coding genes (72 percent) are essential. Similarly, a recent report from scientists long attempting to estimate the simplest possible microbe is a report estimating that such a microbe would have 473 genes with 531,000 base pairs. This is information that all has to be exactly or almost exactly right for a cell to function properly and reproduce.
So we can conclude that the simplest living thing requires at least 300 proteins. The amount of fine-tuned functional information involved is roughly the same as the amount of fine-tuned functional information in a well-written 300-page instruction manual. Just as we would never expect a well-written 300-page instruction manual to arise by chance processes (even given a billion trillion planets for such accidental processes to occur), we would never expect all the required information in a self-reproducing cell to appear by chance.
Each
gene in the DNA of a microbe specifies the amino acid sequence of a
particular protein. So by saying the simplest living thing would need
about 300 types of proteins, we are saying roughly the same thing as
saying that the genome or DNA of the simplest living thing would need
to have at least 300 genes, each of which corresponded to a
particular type of protein.
This
requirement (that the simplest living thing would require at least
300 different types of proteins) would seem to make the accidental origin
of life an impossibility. If you need to have 300 different types of
proteins for a living thing, and the probability of each protein
arising from a chance combination of amino acids is less than 1 in 10
to the hundredth power, then the chance of getting all the proteins
appearing to produce a living thing is much less than 1 in 10 to the
hundredth power to the hundredth power. This gives a probability of much less than about 1 in 10 to the ten-thousandth power, or 1 in 1010,000.
But there are some considerations that might make the situation a
tiny bit more hopeful, such as the possibility of protein domains (or
pieces of proteins) that are functional. I will later discuss that.
Relevant
number 4: the total number of different protein molecule types in the
biological world
When
judging the likelihood of earthly life naturally arising, a supremely
relevant number to consider is: how many different types of protein
molecules are known to exist in the biological world? Each different
type of protein molecule is a different invention that needs to be
explained. We have seen some reasons why tremendous luck would be
required for even one such invention to accidentally occur.
Let's
imagine that in the entire world there were one million types of
protein molecules used by living things. Then the probability of
Earth's protein molecules arising naturally would be vastly smaller
than it would be if there were only 40 different types of protein
molecules in the natural world. Similarly, if millions of people
prayed to a deity and all had their cancer suddenly disappear, the chance
of such a thing happening due to sheer luck would be vastly smaller than it would be if
only 40 people prayed to a deity and had their cancer disappear due to sheer luck.
The
number of types of protein molecules used by earthly life is actually
in the billions. The source here estimates the number as being between ten billion and ten trillion:
"For example, assuming there is 107–108 species on Earth and the genome of each species consists of 103–105 genes, there are 1010–1013 unique protein sequences, a speck compared to the vast sequence space, but still several orders of magnitude more than contained in today's databases."
Each different type of protein molecule is its own separate complex invention. If the accidental origin of a protein molecule can be described as a miracle, then we must believe in between ten billion and ten trillion such miracles if we are to believe that all earthly life naturally originated. You could put this another way by saying that if we believe that earthly life has accidentally originated, we must believe that the miracle of the appearance of a new type of protein molecule originating has occurred at an average rate of at least once per month for the past billion years, and perhaps as often as once every hour.
"For example, assuming there is 107–108 species on Earth and the genome of each species consists of 103–105 genes, there are 1010–1013 unique protein sequences, a speck compared to the vast sequence space, but still several orders of magnitude more than contained in today's databases."
Each different type of protein molecule is its own separate complex invention. If the accidental origin of a protein molecule can be described as a miracle, then we must believe in between ten billion and ten trillion such miracles if we are to believe that all earthly life naturally originated. You could put this another way by saying that if we believe that earthly life has accidentally originated, we must believe that the miracle of the appearance of a new type of protein molecule originating has occurred at an average rate of at least once per month for the past billion years, and perhaps as often as once every hour.
Relevant
number 5: the percentage of protein domains that have been shown to
be units that can exist and function independently
Scientists
have specified that certain protein molecules have more than one
section, what is called a domain. Exactly what constitutes a protein
domain is unclear, and the classification of protein domains varies
between different protein databases that store information about
proteins. When a scientist thinks that a protein molecule consists of
two or more sections, he may designate different parts of the protein
molecules as different domains. This is often as arbitrary as someone
declaring what is the first part of a movie, or someone stating what
he thinks is the upper part of a human being. The concept of protein domains seems largely like an arbitrary theoretical construct.
The
concept of protein domains would seem to offer a little glimmer of
hope for someone discouraged by the immense improbability of a
protein molecule forming by chance. Such a person might argue that
it would not be so hard for a protein molecule to form, because you
would only need to form the domains of that protein, and then those
domains could combine to make the larger protein.
But
is it generally true that protein domains have been shown to be
something that can exist independently with their own function? Such
a thing has not at all been generally shown. Do not be fooled by the
definition that is sometimes given of a protein domain. Wishing to
have a clearer definition of the nebulous idea of a protein domain,
some writers have defined a protein domain as a part of a protein
molecule with its own function that can exist independently. But
countless thousands of protein domains have been classified, and it
has never been shown that even 5 percent of these can
exist independently while performing a function. To show such a
thing, you have to do very specific and hard-to-perform experiments
that have very rarely been done.
The
passage below (from this source) makes clear that all kinds of different criteria have
been used when classifying different domains of a protein:
“Primarily, the term domain
means the distinct structural block of a protein, but quite different
criteria are presently used to identify this block. Identification
can be based on observation of independent folding (2), sequence
motifs (16), presence of a distinct hydrophobic core (17), functional
activity (17,18), contact classification (19), topology (20),
structural homology (21), independent mobility (22–25), and other
properties. Since domain-domain interactions can occur in a broad
range, varying from almost complete structural and dynamic
independence to their complete integrity, the application of these
criteria may lead to quite different results.”
In
the paper here, the authors did experiments suggesting that the
domains of multi-domain proteins may be too unstable to exist and
function independently, noting that such domains are “significantly
less stable” than single-domain proteins.
I
cannot give an exact number for this “percentage of protein
domains that have been shown to be units that can exist and function
independently,” but it would seem that this number is not greater
than ten percent. This is the first of several numbers I will cite
to show that the concept of protein domains does little to reduce the
gigantic improbability involved in any accidental origin of a protein
molecule.
Relevant
number 6: the percentage of protein molecules that have been
classified as single-domain proteins
If
you are a person hoping that protein domains can help reduce the
improbability of new protein molecules originating, you will hope
that all protein molecules are multi-domain proteins.
Unfortunately for such a person, a very large fraction of protein
molecules are single-domain proteins.
It
has been estimated that 35% of the proteins in eukayrotic cells are single-domain
proteins, and that 60% of the proteins in prokaryotic cells are single-domain
proteins.
This
means that protein domains are of little use in helping to reduce the
vast improbability of the formation of a protein molecule (or the
gene that codes for that molecule). At the very best, protein
domains might cause about a 65% reduction in the improbability of
there being many functional protein molecules that originated accidentally. But such a reduction is trivial when you are dealing with
the gigantic improbabilities involved.
To
use an analogy, suppose some observers saw a person throwing a
hundred decks of cards into the wind, and the observers counted that
100 times all of the cards formed into an elegant house of cards. The
chance of this happening naturally is for all practical purposes
zero. Now, suppose it was shown that the tally was in error, and that
only 33 of the decks of cards thrown into the air had formed into houses of
cards. That would still leave you with something that had a probability that was for all practical purposes equal to zero. Similarly, if only about half of proteins
are multi-domain proteins, this means that 50% of proteins are
single-domain proteins. Such single-domain proteins cannot be
explained through any claim that they formed from protein domains that were functional
intermediates.
Relevant
number 7: the average size of a protein domain
If
you are a person hoping that protein domains can help reduce the
improbability of new proteins forming, you would hope that the
average size of a protein domain is small. For example, you might hope that the average size of a protein domain might be merely about twenty amino acids. If it were then true that protein molecules could form from "building blocks" of protein domains, it would not be too hard for such "building blocks" to arise if you only needed about twenty amino acids in each of them.
But the facts are otherwise. The scientific paper here states that "the average length of a protein domain is approx. 120 amino acids." Since there are twenty possible amino acids that can exist in a protein, the probability of getting a random sequence of amino acids matching the exact amino acid sequence of a protein domain would be about 1 in 20 to the 120th power, which equals about 1 in 10 to the one-hundred-fifty-sixth power. This means that by chance we would never expect functional protein domains to ever appear.
But the facts are otherwise. The scientific paper here states that "the average length of a protein domain is approx. 120 amino acids." Since there are twenty possible amino acids that can exist in a protein, the probability of getting a random sequence of amino acids matching the exact amino acid sequence of a protein domain would be about 1 in 20 to the 120th power, which equals about 1 in 10 to the one-hundred-fifty-sixth power. This means that by chance we would never expect functional protein domains to ever appear.
Relevant
number 8: the average number of domains in a protein
If
you are a person hoping that protein domains can help reduce the
improbability of new proteins forming, you will hope that the average
number of domains in a protein is a number such as 10 or 20. If that
were true, it might significantly reduce the improbability that
proteins could have naturally originated. For example, suppose that
without considering protein domains we calculate that there is only 1
chance in 10 to the two-hundredth power of a particular protein forming
from its component amino acids. If that protein can be built from ten
different protein domains, then we might calculate that there is only
1 chance in 10 to the twentieth power of each domain forming. In such a case the
improbability of the protein forming naturally would be greatly reduced.
Unfortunately,
the average number of domains in a protein is small. The table below (from this paper) gives us an indication of the average number of domains in proteins. For example, in the Metazoa column the numbers tell us what percent of proteins consist of two domains, what percent of proteins consist of three domains, and so forth. The average protein has only about 1.3 domains. This means that protein
domains do very little to reduce the vast improbability of functional protein molecules accidentally originating.
Relevant
number 9: the “average promiscuity” of protein domains
When
scientists think that a protein domain is used by more than one
protein, they call such a protein domain a “promiscuous” domain.
The subject of promiscuous domains offers a potential way to find
some evidence that the accidental evolution of proteins is not as
gigantically improbable as it initially seems. Conceivably it could
be discovered that there is great deal of “code re-use” going on
in proteins, which might it easier to explain their origins. The
promiscuity of a particular protein domain can be defined as the
number of proteins that use that domain.
Scientific
studies have been done searching for promiscuous domains used by more
than one protein. But such studies have found very little evidence
that domains are widely re-used by proteins. The study here found
that only 147 protein domains are used by more than one protein. It
also found that when protein domains are promiscuous, they are
usually used by only between 1 and 5 different proteins. Only a
handful of protein domains are used by more than 10 proteins.
Similarly, the science textbook here concludes "there are few common folds" in the universe of all proteins.
A
relevant number to consider here is the average promiscuity of
protein domains. If that number were 4, it would mean that the
average protein domain is used by four different proteins. It seems
from what I discussed in the previous paragraph that the average
promiscuity of protein domains is very close to 1.0. Since there are
billions of different types of proteins, we find almost no evidence of “code re-use”
and promiscuity if we can only find 147 protein domains used by
more than one protein (with most of these being used by only between
1 and 5 proteins). It would seem that the average promiscuity of
protein domains is less than 1.1.
What
this means is that there is virtually no code-reuse in proteins. A high degree of code reuse in proteins would slightly alleviate the problem of explaining the accidental origin of proteins, but there is no such high degree of code reuse.
Relevant
number 10: the percentage of proteins requiring helper molecules
called chaperone proteins
One
of the greatest mysteries of sciences is how proteins fold into their
characteristic three-dimensional shapes, which are required for them
to be functional. Part of the answer is to be found in the fact that
a protein molecule may be helped by some other protein molecule that
helps it fold into the right shape. These helper molecules are
called chaperone proteins.
The
dependency of many protein molecules on other additional molecules is
an additional factor that should make us doubt that protein molecules
could have accidentally originated. Let's imagine a hypothetical case.
Suppose there is a protein molecule consisting of 200 amino acids
arranged in just the right way to achieve a functional effect.
Suppose that this protein molecule cannot fold properly unless it is
helped by some other protein molecule (a chaperone protein) that
itself consists of 200 amino acids. This means that 400 amino acids
had to become arranged in just the right way for the functionality to
work. The chance of that happening would be vastly smaller than the
case in which we only had to have 200 amino acids arranged in the
right way.
So
if you believe that earthly life originated by purely accidental processes, you should hope that very few protein molecules require
chaperone proteins for their proper function. But according to the
source here, twenty to thirty percent of protein molecules require
chaperone proteins. So twenty to thirty percent of protein molecules
cannot even exist independently in a functional state, and have a
dependency on other protein molecules in order to fold properly.
This would seem to be another huge example of fine-tuning in biology,
fine-tuning we would not expect to exist by chance.
Relevant number 11: the probability of a random mutation breaking the functionality of a protein molecule
It is easy to ruin a protein molecule by making minor changes in its sequence of amino acids. Such changes will typically “break” the protein so that it will no longer fold in the right way to achieve the function that it performs. A biology textbook tells us, "Proteins are so precisely built that the change of even a few atoms in one amino acid can sometimes disrupt the structure of the whole molecule so severely that all function is lost." And we read on a science site, "Folded proteins are actually fragile structures, which can easily denature, or unfold." Another science site tells us, "Proteins are fragile molecules that are remarkably sensitive to changes in structure." A paper describing a database of protein mutations tells us that "two thirds of mutations within the database are destabilising." Evolutionary biologist Richard Lewontin stated, "It seems clear that even the smallest change in the sequence of amino acids of proteins usually has a deleterious effect on the physiology and metabolism of organisms."
A very relevant scientific paper is the paper "Protein tolerance to random amino acid change." The authors describe an "x factor" which they define as "the probability that a random amino acid change will lead to a protein's inactivation." Based on their data and experimental work, they estimate this "x factor" to be 34%. It would be a big mistake to confuse this "x factor" with what percentage of a protein's amino acids could be changed without making the protein non-functional. An "x factor" of 34% actually suggests that almost all of a protein's amino acid sequence must exist in its current form for the protein to be functional.
Consider a protein with 375 amino acids (the median number of amino acids in humans). If you were to randomly substitute 4% of those amino acids (15 amino acids) with random amino acids, then (assuming this "x factor" is 34% as the scientists estimated), there would be only about 2 chances in 1000 that such replacements would not make the protein non-functional. The calculation is shown below (I used the Stat Trek binomial probability calculator).
So the paper in question suggests protein molecules are extremely fine-tuned, fragile and sensitive to changes, and that more than 90% of a protein's amino acid sequence has to be in place before the molecule is functional.
It is easy to ruin a protein molecule by making minor changes in its sequence of amino acids. Such changes will typically “break” the protein so that it will no longer fold in the right way to achieve the function that it performs. A biology textbook tells us, "Proteins are so precisely built that the change of even a few atoms in one amino acid can sometimes disrupt the structure of the whole molecule so severely that all function is lost." And we read on a science site, "Folded proteins are actually fragile structures, which can easily denature, or unfold." Another science site tells us, "Proteins are fragile molecules that are remarkably sensitive to changes in structure." A paper describing a database of protein mutations tells us that "two thirds of mutations within the database are destabilising." Evolutionary biologist Richard Lewontin stated, "It seems clear that even the smallest change in the sequence of amino acids of proteins usually has a deleterious effect on the physiology and metabolism of organisms."
In a recent paper we read this: "For example, an analysis of 8,653 proteins based on single mutations
(Xavier et al., 2021) shows the following results: ~68% are destabilizing, ~24% are stabilizing,
and ~8,0% are neutral mutations...while a similar analysis from the observed
free-energy distribution from 328,691 out of 341,860 mutations (Tsuboyama et al., 2023)...indicates that ~71% are destabilizing, ~16% are stabilizing, and ~13% are neutral mutations,
respectively."
A very relevant scientific paper is the paper "Protein tolerance to random amino acid change." The authors describe an "x factor" which they define as "the probability that a random amino acid change will lead to a protein's inactivation." Based on their data and experimental work, they estimate this "x factor" to be 34%. It would be a big mistake to confuse this "x factor" with what percentage of a protein's amino acids could be changed without making the protein non-functional. An "x factor" of 34% actually suggests that almost all of a protein's amino acid sequence must exist in its current form for the protein to be functional.
Consider a protein with 375 amino acids (the median number of amino acids in humans). If you were to randomly substitute 4% of those amino acids (15 amino acids) with random amino acids, then (assuming this "x factor" is 34% as the scientists estimated), there would be only about 2 chances in 1000 that such replacements would not make the protein non-functional. The calculation is shown below (I used the Stat Trek binomial probability calculator).
So the paper in question suggests protein molecules are extremely fine-tuned, fragile and sensitive to changes, and that more than 90% of a protein's amino acid sequence has to be in place before the molecule is functional.
Relevant number 12: the number of protein complexes in organisms
Just as it is not true at all that each employee in a company can do his job working all by himself, it is not true at all that every protein molecule needs nothing beside itself to do its job within a cell. A large fraction of all protein molecules cannot do any useful function unless they are part of some team of protein molecules. Such teams are called protein complexes.
Roughly speaking, the accidental appearance of a protein complex containing a total of x amino acids is about as unlikely as the accidental appearance of a single protein consisting of x amino acids. For example, some particular function might be performed by a single protein that required 900 amino acids to be arranged in just the right way, or it might be performed by a protein complex consisting of one protein molecule with 200 amino acids, another protein molecule consisting of 350 amino acids, and a third protein molecule consisting of 350 amino acids. Either way, we have a situation where 900 amino acids have to be arranged in just the right way.
The more protein complexes there are in a particular organism, the more carefully the biochemistry of that organism has to be organized, and the lower the likelihood of the accidental origination of such an organism. Figure 1 of the paper here suggests that there are many thousands of protein complexes in the human body. The paper here (attempting to map only "soluble" protein complexes) claims to have mapped 600+ protein complexes in the human genome. The 2023 paper here says that the CORUM database now includes 5204 protein complexes, 70% of which are human (meaning there must be thousands of different types of protein complexes in the human body). The paper also says, "Recent proteomic experiments discovered a human protein complex map consisting of 6965 different complexes."
The paper here notes that "a general theoretical framework to understand protein complex formation and usage is still lacking." The very formation of protein complexes (which happens very rapidly) is a miracle of organization beyond the understanding of science. Since humans have 20,000+ different proteins, we should not expect such complexes to arise by chance combinations of proteins; and DNA does not specify which proteins belong to particular protein complexes.
Relevant number 13: the average number of proteins in a protein complex
Besides the total number of protein complexes in an organisms (each requiring multiple proteins), a number of similar relevance is the average number of proteins in a protein complex. Figure 1 of the paper here suggests that the average protein complex in the human body requires about seven different proteins. The greater the average number of proteins in protein complexes, the more carefully the biochemistry of that organism has to be organized, and the lower the likelihood of the accidental origination of such an organism.
Figure 3 of the 2023 paper here ("Identification of Protein Complexes by Integrating Protein Abundance and Interaction Features Using a Deep Learning Strategy") gives us these figures for protein complexes in the human body.:
Protein complexes with 2 proteins: 2188
Protein complexes with 3 proteins: 1160
Protein complexes with 4 proteins: 671
Protein complexes with 5 proteins: 328
Protein complexes with 6 proteins: 209
Protein complexes with 7 proteins: 138
Protein complexes with 8 proteins: 85
Protein complexes with 9 proteins: 51
Protein complexes with 10 proteins: 30
In the figures above it is unclear whether references to protein complexes with a certain number of proteins are actually references to protein complexes with a certain number of types of proteins. A particular protein complex that uses, say, three types of proteins may actually consist of more than three proteins.
Relevant number 14: the number of proteins used in only one protein complex
Whenever a protein is part of a protein complex, and that protein is used only in a single protein complex, it is very much harder to explain the origin of such a protein. If the protein is useful only within a single protein complex, the requirement for having the other proteins in the complex is a case of additional very hard-to-achieve requirements for the protein's usefulness, decreasing the chance that such a protein would ever accidentally appear. According to figure 2 of the paper here, about 3500 proteins are used in only a single protein complex, and not reused in any other protein complex.
Relevant number 15: the number of protein molecules in a cell
A good indicator of the complexity and functional intricacy of a cell is the number of protein molecules inside the cell. This has recently been estimated as being 42 million.
Relevant number 16: the number of cell types in the human body
It has been estimated that there are about 200 different cell types in the human body. None of these can be explained by random mutations that occurred in DNA, because DNA does not specify the plan or blueprint for a particular cell.
Relevant
number 17: the number of organelles in the most complex cell
types
An
organelle is a structural unit inside a cell. The more organelles
that exist in cells, the more complex such cells are. The origin of
a cell with many organelles is much harder to explain naturally than
the origin of a cell with few organelles. Similarly, it would be
much harder to explain the natural origin of a house with 100 rooms
(by something like falling trees accidentally arranging themselves into a house)
than it would be to explain the natural origin of a house with only
one or two rooms.
How
many organelles do cells have? Schematic diagrams of cells are
constantly misleading us by depicting cells with only a few
organelles. Specifically:
- A cell diagram will typically depict a cell as having only a few mitochondria, but cells typically have many thousands of mitochondria, as many as a million.
- A cell diagram will typically depict a cell as having only a few lysosomes, but cells typically have hundreds of lysosomes.
- A cell diagram will typically depict a cell as having only a few ribosomes, but a cell may have up to 10 million ribosomes.
- A cell diagram will typically depict one or a few stacks of a Golgi apparatus, each with only a few cisternae. But a cell will typically have between 10 and 20 stacks, each having as many as 60 cisternae.
The source here tells us that a typical large organism such as a mammal "has hundreds or thousands of these organelles in each of their cells." So most cells are incredibly complicated things, contrary to the impression you might get from looking at a cell diagram.
Relevant
number 18: the number of mammalian body structures specified in genomes
An extremely important number relevant to claims of accidental biological origins are the number of mammalian body structures specified in genomes (the same as DNA molecules). If a genome typically stores a body structure for an organism, then it is conceivable that we can explain a transition from one type of animal species to another by imagining that there were gradual changes in such a genomic body plan. But if no genome stores a body plan, we have no explanation as to how one species could have evolved into some other species with a vastly different body plan.
The actual number of body structures that are stored in the genomes of mammals is zero. The idea that DNA is a blueprint for making a human body or a recipe for making a human body is a myth without any basis in fact. Genomes or DNA only store low-level chemical information such as the amino acid sequence of a protein, not high-level structural information. Genomes are neither blueprints for building organisms nor recipes for making organisms nor programs for making organisms (something confessed by the dozens of biology authorities I quote at the end of this post). So how can we explain the origin of different animal body structures by imagining some gradual change in DNA or genomes? We can't.
An extremely important number relevant to claims of accidental biological origins are the number of mammalian body structures specified in genomes (the same as DNA molecules). If a genome typically stores a body structure for an organism, then it is conceivable that we can explain a transition from one type of animal species to another by imagining that there were gradual changes in such a genomic body plan. But if no genome stores a body plan, we have no explanation as to how one species could have evolved into some other species with a vastly different body plan.
The actual number of body structures that are stored in the genomes of mammals is zero. The idea that DNA is a blueprint for making a human body or a recipe for making a human body is a myth without any basis in fact. Genomes or DNA only store low-level chemical information such as the amino acid sequence of a protein, not high-level structural information. Genomes are neither blueprints for building organisms nor recipes for making organisms nor programs for making organisms (something confessed by the dozens of biology authorities I quote at the end of this post). So how can we explain the origin of different animal body structures by imagining some gradual change in DNA or genomes? We can't.
Relevant
number 19: the number of organs, limbs or appendages specified in genomes
As relevant as number 17 is the number of organs, limbs or appendages that are specified in genomes or DNA. Just as number 17 is zero, this number is also zero. Genomes or DNA only store low-level chemical information such as the amino acid sequence of a protein, not high-level structural information such as a specification of an organ, a limb or a body appendage. So how can we explain the origin of different organs and limbs and appendages by imagining some gradual change in DNA or genomes? We can't.
As relevant as number 17 is the number of organs, limbs or appendages that are specified in genomes or DNA. Just as number 17 is zero, this number is also zero. Genomes or DNA only store low-level chemical information such as the amino acid sequence of a protein, not high-level structural information such as a specification of an organ, a limb or a body appendage. So how can we explain the origin of different organs and limbs and appendages by imagining some gradual change in DNA or genomes? We can't.
Relevant
number 20: the number of cell types specified in genomes
As relevant as number 17 and number 18 is the number of cell types that are specified in genomes or DNA. Just as number 17 and number 18 are zero, this number is also zero. Genomes or DNA only store low-level chemical information such as the amino acid sequence of a protein, not high-level structural information such as the structure of a cell. Humans have about two hundred types of cells, and DNA does not specify how to make any one of them. So how can we explain the origin of different cell types by imagining some gradual change in DNA or genomes? We can't.
Relevant number 21: the number of natural protein molecules or natural genes that have been proven to have originated from random mutations, natural selection, or any combination of the two
An important number to consider is: of the total number of different types of protein molecules in the animal kingdom (estimated to be between 10 billion and 10 trillion), how many have been proven to have originated from random mutations, natural selection, or any combination of the two? The answer is zero.
We can imagine a hypothetical long-term experiment by which a scientist might substantiate the idea that a useful new type of protein molecule can originate through random mutations or natural selection. Some organisms could have their DNA thoroughly mapped, and the organisms could be placed in a zoo or a lab. The descendants of the organisms could be tracked over multiple generations, with organisms from each generation having their DNA thoroughly mapped. It might be determined that some new type of protein molecule was being formed, from some accumulation of random mutations occurring over multiple generations. No such experiment has ever succeeded in showing that any new type of protein molecule can originate from natural selection, random mutations, or any combination of the two.
Relevant number 22: the number of living things that have originated in experiments realistically simulating the early Earth
If some experiment realistically simulating early Earth conditions could produce a living self-reproducing organism from non-life, that would do a great deal to bolster claims that life first originated through some accidental process. No living self-reproducing organism has ever been produced by such an experiment.
The number of types of amino acids that have been produced through experiments realistically simulating early Earth conditions is either 0, 1 or 2. Most experiments claiming to simulate early Earth conditions have failed to do so. 18 out of the 20 amino acids used by living things have never been produced in experiments realistically simulating the early Earth. Some experiments which were arguably realistic simulations of early Earth have produced either alanine or glycine (the two simplest amino acids) in very tiny trace amounts such as 40 parts per million.
If some experiment realistically simulating early Earth conditions could produce a living self-reproducing organism from non-life, that would do a great deal to bolster claims that life first originated through some accidental process. No living self-reproducing organism has ever been produced by such an experiment.
Relevant number 23: the number of functional proteins that have originated in experiments realistically simulating the early Earth
One-celled living things require many types of protein molecules. We might call such protein molecules the "building blocks" of one-celled microbes, except that such a term would misleadingly suggest protein molecules are simple (and as discussed above, most protein molecules are not simple, but consist of hundreds of amino acids arranged in just the right way to produce a functional effect). A number relevant to the credibility of claims of accidental biological origins is the number of functional protein molecules that have originated in experiments attempting to simulate the early Earth. That number is zero.
Relevant number 24: the number of amino acid types that have originated in experiments realistically simulating the early Earth
Often called the building blocks of life, amino acids are more correctly described as the building blocks of the building blocks of cells. Living things use twenty different types of amino acids. The more types of amino acids that can be produced in experiments realistically simulating early Earth conditions, the more credible is the idea that life might have accidentally originated from non-life long ago on Earth.
The most famous experiment attempting to produce amino acids while simulating early Earth conditions was the Miller-Urey experiment, which produced several types of amino acids used by living things. Unfortunately the Miller-Urey experiment never was a realistic simulation of early Earth conditions, for reasons explained below and in the post here.
The number of types of amino acids that have been produced through experiments realistically simulating early Earth conditions is either 0, 1 or 2. Most experiments claiming to simulate early Earth conditions have failed to do so. 18 out of the 20 amino acids used by living things have never been produced in experiments realistically simulating the early Earth. Some experiments which were arguably realistic simulations of early Earth have produced either alanine or glycine (the two simplest amino acids) in very tiny trace amounts such as 40 parts per million.
Relevant number 25: the number of nucleotide types that have originated in experiments realistically simulating the early Earth
Life requires not just many types of proteins, but also nucleic acids such as DNA and RNA. The building blocks of DNA are four nucleotides: adenine (A), cytosine (C), guanine (G), and thymine (T). The building blocks of RNA are three of these nucleotides and another one, uracil.
The more types of nucleotides that can be produced in experiments realistically simulating early Earth conditions, the more credible is the idea that life might have accidentally originated from non-life long ago on Earth. Unfortunately, none of these five nucleotides has ever been produced in an experiment realistically simulating early Earth conditions.
There is no geological, astronomical or meteorological reason for thinking that amino acids or nucleotides existed in anything other than negligible amounts before life existed, and there is no evidence basis for believing that there ever existed any such thing as a prebiotic "primordial soup" that was rich in either amino acids or the building blocks of DNA (nucleotides).
Relevant number 26: the number of different chiral forms that an amino acid can have
Amino acids have two different chiral forms: a left-handed form and a right-handed form. When they are artificially created, amino acids with a left-handed form are produced in the same numbers as amino acids with a right-handed form. Excluding glycine (which is essentially too simple to have either a left-handed or a right-handed form), all of the 20 amino acids used by living things occur only in the left-handed form.
The fact that amino acids have two different chiral forms is a very great problem for all claims that life accidentally originated. Because the simplest self-reproducing cell would require hundreds of different types of proteins, most using hundreds of amino acids, it would seem that more than 20,000 amino acids would be needed for the origin of life, all of them left-handed. The probability of all of those amino acids being left-handed is like the probability of you flipping a coin 20,000 consecutive times, and always getting "tails" without ever getting "heads." This problem (discussed at greater length here) is called the problem of homochirality. Homochirality seems like an accidentally unachievable state.
Relevant number 27: the number of different types of protein molecules in the human body
Previously I gave a hard-to-remember estimate of the total number of different types of protein molecules in the animal kingdom (between 1010–1013 unique protein sequences). An easier-to-remember number is the total number of different types of protein molecules in the human body. That number is roughly 20,000. Each of these is its own separate complex invention, most with hundreds of different amino acid parts arranged in just the right way to produce a particular function. Our biology teachers do such a poor job of teaching the realities of biological complexity that if you were to tell someone that inside his body there are 20,000 different types of complex inventions, he might think you are joking. Such a reality should be as familiar to biology students as the fact that humans are made of carbon compounds.
Conclusion
The numbers I have discussed here collectively argue with overwhelming force that we have no understanding of how the wonders of biology could have originated through accidental processes. Many or most of the numbers I have discussed are very strong reasons for thinking it is incredibly improbable that the earth's wonders of biology could have originated through any such random or accidental process. But our biologists typically tell us the opposite. How can this occur?
It's simple. When biologists tell us things such as that life first originated by accidental combinations of chemicals, and that new species and dramatic biological innovations arose from mere random mutations and survival of the fittest, they are not engaging in numerical reasoning. Such claims have never been based on numerical reasoning. When they attempt to convince us that the earth's organisms accidentally originated, biologists today follow the approach of Darwin, who made no appreciable use of numerical reasoning in any of his published works. Today's biologists do not pay attention to most of the numbers I have discussed, which are all numbers that anyone should pay very close attention to before making a judgment about the origin of earthly organisms.
The numbers I have discussed here collectively argue with overwhelming force that we have no understanding of how the wonders of biology could have originated through accidental processes. Many or most of the numbers I have discussed are very strong reasons for thinking it is incredibly improbable that the earth's wonders of biology could have originated through any such random or accidental process. But our biologists typically tell us the opposite. How can this occur?
It's simple. When biologists tell us things such as that life first originated by accidental combinations of chemicals, and that new species and dramatic biological innovations arose from mere random mutations and survival of the fittest, they are not engaging in numerical reasoning. Such claims have never been based on numerical reasoning. When they attempt to convince us that the earth's organisms accidentally originated, biologists today follow the approach of Darwin, who made no appreciable use of numerical reasoning in any of his published works. Today's biologists do not pay attention to most of the numbers I have discussed, which are all numbers that anyone should pay very close attention to before making a judgment about the origin of earthly organisms.
We may compare such biologists to someone who becomes convinced he's going to make a huge profit from buying a particular house, but who pays no attention to relevant numbers such as the house's current sales price, the house's price compared to similar houses on the street, the house's sale price when previously sold, the mortgage rate, the probability of flooding at the house location, and the current rate of increase or decrease in house prices in that house's location. Just as fundamentalists do not use numerical reasoning to reach the belief that the Bible is infallible, biologists do not use numerical reasoning to reach the belief that the earth's species accidentally originated. Both of these beliefs are articles of faith rather than conclusions reached through numerical reasoning.
Pauli also stated the following about Darwinist biologists:
“In discussions with biologists I met large difficulties when they apply the concept of ‘natural selection’ in a rather wide field, without being able to estimate the probability of the occurrence in a empirically given time of just those events, which have been important for the biological evolution. Treating the empirical time scale of the evolution theoretically as infinity they have then an easy game, apparently to avoid the concept of purposesiveness. While they pretend to stay in this way completely ‘scientific’ and ‘rational’, they become actually very irrational, particularly because they use the word ‘chance’, not any longer combined with estimations of a mathematically defined probability, in its application to very rare single events more or less synonymous with the old word ‘miracle’.”
The lack of relevant probability calculations by Darwinists bothered the eminent physicist Wolfgang Pauli, discoverer of the subatomic Pauli Exclusion Principle on which our existence depends. Pauli stated the following:
"I should like to critically object that this model has not been supported by an affirmative estimate of probabilities so far. Such an estimate of the theoretical time scale of evolution as implied by the model should be compared with the empirical time scale. One would need to show that, according to the assumed model, the probability of de facto existing purposeful features to evolve was sufficiently high on the empirically known time scale. Such an estimate has nowhere been attempted though."
Pauli also stated the following about Darwinist biologists:
“In discussions with biologists I met large difficulties when they apply the concept of ‘natural selection’ in a rather wide field, without being able to estimate the probability of the occurrence in a empirically given time of just those events, which have been important for the biological evolution. Treating the empirical time scale of the evolution theoretically as infinity they have then an easy game, apparently to avoid the concept of purposesiveness. While they pretend to stay in this way completely ‘scientific’ and ‘rational’, they become actually very irrational, particularly because they use the word ‘chance’, not any longer combined with estimations of a mathematically defined probability, in its application to very rare single events more or less synonymous with the old word ‘miracle’.”
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